Index

_

__author__ (in module freqsap) __email__ (in module freqsap) __str__() (freqsap.accession.Accession method) (freqsap.variation.Variation method) __version__ (in module freqsap) _accession (freqsap.protein.Protein attribute), [1] _check_response() (in module freqsap.ebi) _get_dbsnp_id() (in module freqsap.ebi) _get_variants() (in module freqsap.ebi) _headers (freqsap.ebi.EBI attribute) (freqsap.uniprot.UniProt attribute) _id (freqsap.accession.Accession attribute) _mapping (freqsap.report.PopulationFilter attribute)

_metadata (freqsap.report.ReferenceSNPReport attribute), [1] _num_required_columns (freqsap.dbsnp.DBSNP attribute) _num_required_sections (freqsap.dbsnp.DBSNP attribute) _params (freqsap.uniprot.UniProt attribute) _pattern (freqsap.accession.Accession attribute) _request() (freqsap.ebi.EBI method) _studies (freqsap.report.ReferenceSNPReport attribute), [1] _timeout (freqsap.dbsnp.DBSNP attribute) (freqsap.ebi.EBI attribute) (freqsap.uniprot.UniProt attribute) _variation (freqsap.report.ReferenceSNPReport attribute), [1] _variations (freqsap.protein.Protein attribute), [1] _write_csv() (in module freqsap.__main__) _write_xlsx() (in module freqsap.__main__)

A

Accession (class in freqsap.accession) AccessionNotFoundError Allele (class in freqsap.allele) alternatives (freqsap.study.Study attribute), [1] apply() (freqsap.report.PopulationFilter static method)

available() (freqsap.dbsnp.DBSNP method) (freqsap.ebi.EBI method) (freqsap.interfaces.ProteinVariantAPI method) (freqsap.interfaces.VariantFrequencyAPI method) (freqsap.uniprot.UniProt method)

C

check_apis() (in module freqsap.__main__)

D

DBSNP (class in freqsap.dbsnp)

E

EBI (class in freqsap.ebi)

F

freqsap module freqsap.__main__ module freqsap.accession module freqsap.allele module freqsap.dbsnp module freqsap.ebi module freqsap.exceptions module

freqsap.interfaces module freqsap.protein module freqsap.report module freqsap.study module freqsap.uniprot module freqsap.variation module frequency (freqsap.allele.Allele attribute), [1]

G

get() (freqsap.dbsnp.DBSNP method) (freqsap.ebi.EBI method) (freqsap.interfaces.ProteinVariantAPI method) (freqsap.interfaces.VariantFrequencyAPI method) (freqsap.uniprot.UniProt method)

group (freqsap.study.Study attribute), [1]

H

header() (freqsap.report.ReferenceSNPReport method) (freqsap.study.Study method)

I

is_dbsnp() (freqsap.uniprot.UniProt method)

M

main() (in module freqsap.__main__) message (freqsap.exceptions.AccessionNotFoundError attribute) module freqsap freqsap.__main__ freqsap.accession freqsap.allele freqsap.dbsnp freqsap.ebi freqsap.exceptions freqsap.interfaces freqsap.protein freqsap.report freqsap.study freqsap.uniprot freqsap.variation

N

nucleotide (freqsap.allele.Allele attribute), [1]

P

parse() (freqsap.uniprot.UniProt method) parse_args() (in module freqsap.__main__) population (freqsap.study.Study attribute), [1]

PopulationFilter (class in freqsap.report) position (freqsap.variation.Variation attribute), [1] Protein (class in freqsap.protein) ProteinVariantAPI (class in freqsap.interfaces)

Q

query() (freqsap.uniprot.UniProt method)

R

ref (freqsap.variation.Variation attribute), [1] reference (freqsap.study.Study attribute), [1] ReferenceSNPReport (class in freqsap.report)

request() (freqsap.uniprot.UniProt method) row() (freqsap.study.Study method) rows() (freqsap.report.ReferenceSNPReport method)

S

size (freqsap.study.Study attribute), [1]

source (freqsap.study.Study attribute), [1] Study (class in freqsap.study)

U

UniProt (class in freqsap.uniprot)

V

valid() (freqsap.accession.Accession method) (freqsap.variation.Variation method)

VariantFrequencyAPI (class in freqsap.interfaces) Variation (class in freqsap.variation) variations (freqsap.protein.Protein property)

W

write_reports() (in module freqsap.__main__)