freqsap.variation

Module for representing genetic variations.

Classes

Represents a genetic variation.

Module Contents

class freqsap.variation.Variation[source]

Represents a genetic variation.

ref[source]

The reference SNP identifier (e.g., ‘rs123456’).

Type:: str

position[source]

The position of the variation in the protein sequence.

Type:: int

ref: str[source]

position: int[source]

valid() → bool[source]

Validate the variation.

Checks if the reference ID starts with ‘rs’ and position is positive.

Returns:: True if valid, False otherwise.
Return type:: bool

__str__() → str[source]

Return the string representation of the variation.

Returns:: The reference SNP identifier.
Return type:: str